Cassiopeia,
It's easy to implement your own logic to hide certain features. We will add this feature soon.
For the time being, please open cuteeditor_files\Dialogs\browse_Img.php
In line 154, you can find the following code:
while (list ($key, $file) = each ($dirlist))
{
//add your logic here, for example create an array which holds all certain folders you want to hide
//check whether this folder name ( $file) is exists in the above array or not
...
}
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