I downloaded the latest version, but I am still seeing the problem.  It is like the editor sees them as relative and wants to add the current url to the link.  This is a problem because I save the pages to a database and then pull them out to display based on an ado query.  All of my links are pointing back to the page that the editor is on not the page that should be displaying.

 

Here is the configuration:

<CE:Editor
  id="Editor1"
  EditorWysiwygModeCss="Publisher.css"
  runat="server"
  tabindex="1"
  width="900px"
  style="Z-INDEX: 1000; POSITION=absolute"
  ConfigurationPath="Publisher.config"
  BreakElement="P"
  RemoveServerNamesFromUrl="true"
  UseRelativeLinks="true">
 </CE:Editor>